Basic Information
Locus ID:
nbis-gene-34201
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00047.1 | 909655 | 910809 | + | nbis-gene-34201 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 39,167.03 Da | 44.05 | 88.02 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 313 | 342 | 3.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 309 | 354 | 1.37E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 297 | 355 | 2.6E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 314 | 356 | 0.0056 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 314 | 354 | 10.350093 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01150.1 | RING-H2 finger protein 2B. Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils. | 0 |
| RefSeq | XP_004954590.1 | E3 ubiquitin-protein ligase ATL23 [Setaria italica] | 0 |
| Q9ZU51 | E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2 | 0 | |
| TrEMBL | A0A1E5VXJ6 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0009175 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH07.1025, AH07.1027, AH07.1028, BH07.1144, BH07.1146 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0107740, gene-QOZ80_2AG0108990 ... |
| Poaceae | Oryza coarctata | 3 | Oco03G006770, Oco04G007040, Oco04G007050 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g15000.1, LOC_Os02g15010.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G104000, gene-BS78_04G104100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013650, Chr0G033270, Chr15G023350 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G503100, Tel1E01G503200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1BG052490, gene_TRIDC1BG052500 |
| Poaceae | Triticum aestivum | 14 | TraesCS1A02G311600.1.cds1, TraesCS1B02G323200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb238450_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34201, nbis-gene-53144 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12514, Zma_g15401 |