Basic Information
Locus ID:
nbis-gene-33940
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00046.1 | 962075 | 965871 | + | nbis-gene-33940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 95,691.67 Da | 52.58 | 77.87 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 1 | 103 | 1.28196E-33 | - |
| Pfam | PF00098 | Zinc knuckle | 506 | 519 | 4.2E-4 | IPR001878 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 290 | 419 | 3.1E-8 | - |
| Pfam | PF00665 | Integrase core domain | 741 | 840 | 6.4E-10 | IPR001584 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 14 | 102 | 5.0E-11 | IPR000477 |
| Pfam | PF13976 | GAG-pre-integrase domain | 672 | 735 | 7.7E-9 | IPR025724 |
| Pfam | PF13961 | Domain of unknown function (DUF4219) | 256 | 281 | 2.3E-8 | IPR025314 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1 | 125 | 4.11E-35 | IPR043502 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 492 | 519 | 3.14E-5 | IPR036875 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 737 | 850 | 1.77E-24 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 734 | 850 | 6.6E-24 | IPR036397 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 2 | 29 | 6.5E-30 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 30 | 103 | 6.5E-30 | IPR043128 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 738 | 850 | 18.533859 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 201 | - | - |
| Coils | Coil | Coil | 203 | 223 | - | - |
| Coils | Coil | Coil | 780 | 800 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040384195.1 | uncharacterized protein LOC121055551 [Oryza brachyantha] | 0 |
| P20825 | Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A3L6PPH5 | Putative gag-pol polyprotein OS=Panicum miliaceum OX=4540 GN=C2845_PM14G10160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 4 | Ftri18G33038, Ftri6G26243, Ftri6G34149, FtriNA26240 |
| Brassicaceae | Brassica nigra | 3 | BniB02g044040.2N, BniB05g046390.2N, BniB07g028240.2N |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029076, Pov_00039561 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.168, AH01.4944, AH04.1262, AH05.424, AH07.1449 ... |
| Poaceae | Eleusine coracana subsp. coracana | 85 | gene-QOZ80_1AG0019300, gene-QOZ80_1AG0021820 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_002090, gene-QYE76_004107, gene-QYE76_010998 ... |
| Poaceae | Oryza coarctata | 2 | Oco06G010700, Oco21G004780 |
| Poaceae | Sporobolus alterniflorus | 17 | Chr01G029280, Chr04G018110, Chr04G029980, Chr05G019600 ... |
| Poaceae | Zoysia japonica | 66 | nbis-gene-12256, nbis-gene-12257, nbis-gene-1525 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3359 |