Basic Information
Locus ID:
nbis-gene-33700
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00045.1 | 1648368 | 1652610 | - | nbis-gene-33700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.80 | 45,337.11 Da | 52.66 | 94.24 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 31 | 74 | 4.2E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 68 | 2.88E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 185 | 374 | 4.32E-13 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 79 | 3.6E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 166 | 388 | 1.5E-12 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 29 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26922.4 | - | 0 |
| RefSeq | XP_025826102.1 | F-box/LRR-repeat protein At3g03360-like [Panicum hallii] | 0 |
| Q9LJF8 | F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana OX=3702 GN=At3g26922 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9VCU5 | F-box domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_24413 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6181 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2053 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008888 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G007350, COCNU_04G007380 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103717301, gene-LOC103718683, gene-LOC103719349 |
| Asparagaceae | Asparagus officinalis | 8 | AsparagusV1_03.2306.V1.1, AsparagusV1_03.939.V1.1 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019973, Pov_00040073 |
| Poaceae | Echinochloa crus-galli | 22 | AH06.2738, AH06.2740, AH06.2743, AH06.2746, AH06.2747 ... |
| Poaceae | Eleusine coracana subsp. coracana | 9 | gene-QOZ80_2AG0102240, gene-QOZ80_2BG0155600 ... |
| Poaceae | Hordeum vulgare | 7 | HORVU.MOREX.r3.2HG0196820.1, HORVU.MOREX.r3.6HG0564870.1 ... |
| Poaceae | Lolium multiflorum | 10 | gene-QYE76_005122, gene-QYE76_017618, gene-QYE76_020634 ... |
| Poaceae | Oryza coarctata | 7 | Oco02G006440, Oco02G006460, Oco03G002930, Oco04G002880 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g13910.1, LOC_Os02g06520.1, LOC_Os06g47100.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_04G044700, gene-BS78_10G235400 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0202543, Pt_Chr0202552, Pt_Chr0307263, Pt_Chr0307311 ... |
| Poaceae | Sporobolus alterniflorus | 9 | Chr02G032030, Chr02G032040, Chr05G010020, Chr05G010030 ... |
| Poaceae | Thinopyrum elongatum | 9 | Tel1E01G463200, Tel2E01G766500, Tel5E01G370100 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG064410, gene_TRIDC2BG068680 ... |
| Poaceae | Triticum aestivum | 18 | TraesCS2A02G451200.1, TraesCS2B02G472500.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb207690_P001, Zm00001eb232670_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-29923, nbis-gene-33700, nbis-gene-40602 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g12219, Zma_g14976, Zma_g15906, Zma_g21105, Zma_g33279 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.904 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g00740 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3578 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G2259, TC07G2260 |