Basic Information
Locus ID:
nbis-gene-33552
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00045.1 | 1003223 | 1009801 | + | nbis-gene-33552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 80,736.18 Da | 36.20 | 88.60 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 281 | 657 | 1.44487E-144 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 284 | 477 | 2.5E-21 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 277 | 531 | 9.94E-39 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 36 | 255 | 7.53E-15 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 530 | 658 | 2.27E-8 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 278 | 530 | 1.4E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 139 | 260 | 4.3E-15 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 531 | 658 | 4.1E-10 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 36 | 138 | 1.9E-7 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 279 | 571 | 25.892628 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 37 | 260 | 11.747413 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58170.1 | SHV3-like 5. | 0 |
| RefSeq | XP_025809767.1 | glycerophosphodiester phosphodiesterase GDPDL7-like isoform X1 [Panicum hallii] | 0 |
| Q9LVN0 | Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 GN=GDPDL7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9SST3 | glycerophosphodiester phosphodiesterase OS=Eragrostis curvula OX=38414 GN=EJB05_52553 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology