Basic Information
Locus ID:
nbis-gene-33502
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00045.1 | 790843 | 796005 | - | nbis-gene-33502 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 67,326.35 Da | 48.32 | 87.31 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 235 | 279 | 1.18016E-6 | IPR018392 |
| Pfam | PF01476 | LysM domain | 237 | 280 | 2.6E-6 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 235 | 280 | 1.15E-5 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 450 | 547 | 9.0E-8 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 225 | 287 | 3.8E-9 | IPR036779 |
| SMART | SM00257 | LysM_2 | 236 | 280 | 0.0029 | IPR018392 |
| SMART | SM00257 | LysM_2 | 168 | 216 | 0.48 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 235 | 279 | 11.164466 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 313 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_039788555.1 | protein LYK5-like [Panicum virgatum] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6RXM9 | Protein LYK5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM11G00210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology