Basic Information
Locus ID:
nbis-gene-33454
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
EBF1
Description:
Leucine-rich repeat - CC (cysteine-containing) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00045.1 | 609144 | 612202 | + | nbis-gene-33454 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 88,243.21 Da | 47.33 | 96.09 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 403 | 426 | 1.4 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 561 | 583 | 0.88 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 456 | 477 | 0.8 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 527 | 790 | 2.94E-39 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 363 | 601 | 2.04E-34 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 242 | 282 | 5.76E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 531 | 736 | 1.0E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 326 | 530 | 1.9E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 741 | 831 | 1.6E-14 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 429 | 454 | 0.025 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 587 | 612 | 280.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 377 | 402 | 6.3 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 641 | 666 | 45.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 667 | 692 | 0.08 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 403 | 428 | 1.6E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 773 | 798 | 39.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 747 | 771 | 0.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 561 | 586 | 0.0014 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 694 | 719 | 1.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 721 | 746 | 0.0013 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 455 | 480 | 2.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 348 | 376 | 470.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 535 | 560 | 13.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_004951542.1 | EIN3-binding F-box protein 1 [Setaria italica] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VDN1 | F-box domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_24727 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology