Basic Information
Locus ID:
nbis-gene-33412
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Galactose oxidase, central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00045.1 | 417386 | 418489 | + | nbis-gene-33412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 39,074.11 Da | 53.05 | 76.40 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 121 | 156 | 4.5E-5 | IPR006652 |
| Pfam | PF00646 | F-box domain | 5 | 37 | 1.2E-4 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 159 | 204 | 2.3E-7 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 79 | 330 | 1.27E-38 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 51 | 9.81E-6 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 69 | 361 | 1.5E-34 | IPR015915 |
| SMART | SM00612 | kelc_smart | 121 | 169 | 1.1E-5 | IPR006652 |
| SMART | SM00612 | kelc_smart | 171 | 218 | 2.9E-4 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80440.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_039788725.1 | F-box/kelch-repeat protein At1g80440-like [Panicum virgatum] | 0 |
| Q9M8L2 | F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7F3H9 | F-box domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G081400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology