Basic Information
Locus ID:
nbis-gene-33340
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00045.1 | 81866 | 92604 | - | nbis-gene-33340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 67,864.23 Da | 46.24 | 88.20 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 243 | 313 | 7.8E-18 | IPR033389 |
| SUPERFAMILY | SSF52058 | L domain-like | 313 | 500 | 2.27E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 301 | 507 | 2.9E-39 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 244 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16500.1 | phytochrome-associated protein 1. phytochrome-associated protein 1 (PAP1) | 0 |
| RefSeq | XP_039788839.1 | auxin-responsive protein IAA7-like [Panicum virgatum] | 0 |
| Q6H543 | Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VAM0 | Auxin-responsive protein OS=Eragrostis curvula OX=38414 GN=EJB05_24955 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Zoysia japonica | 3 | nbis-gene-33340, nbis-gene-34256, nbis-gene-56719 |