Basic Information
Locus ID:
nbis-gene-33262
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00044.1 | 1956947 | 1968579 | + | nbis-gene-33262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 48,898.22 Da | 41.79 | 82.89 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14493 | Helix-turn-helix domain | 224 | 296 | 5.4E-14 | IPR029491 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 57 | 164 | 2.47E-7 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 186 | 221 | 9.94E-6 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 57 | 136 | 6.3E-17 | IPR027417 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_039797248.1 | probable ATP-dependent DNA helicase RecQ [Panicum virgatum] | 0 |
| O34748 | ATP-dependent DNA helicase RecQ OS=Bacillus subtilis (strain 168) OX=224308 GN=recQ PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SQD2 | ATP-dependent DNA helicase OS=Eragrostis curvula OX=38414 GN=EJB05_53381 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology