Basic Information
Locus ID:
nbis-gene-32424
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00043.1 | 909754 | 923525 | - | nbis-gene-32424 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 117,727.35 Da | 42.91 | 76.58 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 441 | 480 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 400 | 438 | 7.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 447 | 1022 | 5.26E-34 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 340 | 624 | 4.21E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 488 | 617 | 3.1E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 696 | 870 | 1.7E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 871 | 1026 | 2.1E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 328 | 487 | 7.4E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 989 | 1021 | 83.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 780 | 821 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 930 | 966 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 484 | 527 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 378 | 0.067 | IPR001680 |
| SMART | SM00668 | ctlh | 56 | 114 | 5.3E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 530 | 573 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 440 | 481 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 438 | 4.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 824 | 864 | 3.4 | IPR001680 |
| SMART | SM00667 | Lish | 26 | 58 | 1.7E-5 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 404 | 439 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 26 | 58 | 10.411642 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 551 | 582 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 56 | 114 | 13.903103 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 425 | 439 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1043 | 1060 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1021 | 1060 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_025816151.1 | protein TPR1 isoform X1 [Panicum hallii] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UGW4 | WD_REPEATS_REGION domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_32112 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology