Basic Information
Locus ID:
nbis-gene-31508
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00040.1 | 1837921 | 1839827 | - | nbis-gene-31508 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 57,732.46 Da | 75.00 | 68.06 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 323 | 367 | 9.77023E-28 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 324 | 365 | 3.6E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 319 | 378 | 2.16E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 305 | 379 | 9.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 325 | 365 | 4.3E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 325 | 366 | 13.787542 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 340 | 349 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 506 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58030.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025817079.1 | uncharacterized protein LOC112893797 [Panicum hallii] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VNR3 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_18644 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_08G005520, COCNU_10G001980 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103698592, gene-LOC103705035, gene-LOC103713033 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.82.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno12g05000, gene.Cymno16g04850 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g06600 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.3757, BH07.4083 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0038680, gene-QOZ80_1BG0088710 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0071960.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_014123, gene-QYE76_055807 |
| Poaceae | Oryza coarctata | 4 | Oco01G023980, Oco02G024750, Oco09G011970, Oco10G011940 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g61420.1, LOC_Os05g39380.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G324400, gene-BS78_09G173300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601909, Pt_Chr0601999 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G018730, Chr02G005690, Chr05G027680, Chr18G011740 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G478700, Tel3E01G561200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG043950, gene_TRIDC1BG049780 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G296100.1.cds1, TraesCS1B02G304900.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb290120_P001, Zm00001eb351820_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-11524, nbis-gene-14205, nbis-gene-24191 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g11467, Zma_g27028, Zma_g28414, Zma_g8926 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g01050 |
| Zosteraceae | Zostera marina | 1 | Zosma01g12390.v3.1 |