Basic Information
Locus ID:
nbis-gene-31343
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00040.1 | 1123104 | 1128144 | + | nbis-gene-31343 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 72,177.13 Da | 57.09 | 77.42 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04660 | nsLTP_like | 35 | 110 | 1.47852E-20 | IPR044741 |
| CDD | cd04660 | nsLTP_like | 119 | 194 | 9.67694E-22 | IPR044741 |
| Pfam | PF14368 | Probable lipid transfer | 17 | 110 | 5.9E-8 | IPR016140 |
| Pfam | PF14368 | Probable lipid transfer | 118 | 194 | 4.1E-7 | IPR016140 |
| SUPERFAMILY | SSF47699 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 119 | 188 | 2.08E-5 | IPR036312 |
| SUPERFAMILY | SSF81383 | F-box domain | 286 | 329 | 1.5E-9 | IPR036047 |
| SUPERFAMILY | SSF47699 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 35 | 105 | 3.59E-6 | IPR036312 |
| Gene3D | G3DSA:1.10.110.10 | - | 33 | 107 | 1.1E-9 | IPR036312 |
| Gene3D | G3DSA:1.20.1280.50 | - | 277 | 353 | 5.0E-6 | - |
| Gene3D | G3DSA:1.10.110.10 | - | 117 | 191 | 4.6E-9 | IPR036312 |
| SMART | SM00499 | aai_6 | 35 | 110 | 0.51 | IPR016140 |
| SMART | SM00499 | aai_6 | 130 | 194 | 5.0 | IPR016140 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 267 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30880.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein. | 0 |
| RefSeq | XP_004970267.1 | uncharacterized protein LOC101757323 [Setaria italica] | 0 |
| TrEMBL | A0A3L6R298 | F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM08G28410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31353 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4615 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022040 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g062290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59435, Sbi_jg63212 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23681 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020709 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02821, Sgl07942 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000012518, gene:ENSEOMG00000029847 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0022100, CQ.Regalona.r1.3BG0022810 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30217690 |
| Apiaceae | Apium graveolens | 1 | Ag3G01400 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G004710 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705073 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G01839 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G04010.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10015413m.g.v1.0, Thhalv10015674m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g38750.v2.2 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2543 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031126 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0036750, gene-QOZ80_1BG0086750 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055945 |
| Poaceae | Oryza coarctata | 1 | Oco01G022450 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g58670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G307200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0601733 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G018080, Chr08G023720 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G527200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG047540, gene_TRIDC3BG053720 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G330000.1.cds1, TraesCS3B02G360100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb150670_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31343 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11345 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1267, evm.TU.LG21.899 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6491 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2005 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21092 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13326 |
| Salicaceae | Populus euphratica | 5 | populus_peu09765, populus_peu09768, populus_peu09769 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615835, gene-LOC132615870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001799500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017456 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11865 |