Basic Information
Locus ID:
nbis-gene-31254
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00040.1 | 761311 | 768307 | + | nbis-gene-31254 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 32,824.14 Da | 29.64 | 91.59 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 2 | 181 | 2.85242E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 130 | 8.7E-11 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 205 | 281 | 6.5E-12 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 172 | 2.1E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 41 | 75 | 8.2E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 185 | 2.23E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 79 | 1.2E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 80 | 228 | 1.8E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 36 | 75 | 8.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 1.5E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 3.3E-10 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 175 | 12.420132 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 43 | 77 | 12.156496 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 15.621435 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 43 | 84 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 17.827036 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 135 | 13.791033 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 62 | 76 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 117 | 131 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 3.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 62 | 76 | 3.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 3.6E-8 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_020878157.1 | uncharacterized protein LOC110227631 isoform X2 [Arabidopsis lyrata subsp. lyrata] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0SR58 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Panicum virgatum OX=38727 GN=PVAP13_5KG572300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g128360 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl04549, Sgl09595, Sgl15470, Sgl22341, Sgl27592, Sgl44438 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000012172 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10023689m.g.v1.0, Thhalv10024116m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB05g063820.2N |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0526s00007.v1.0, Dusal.0840s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g03560 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr0G013900 |
| Poaceae | Zea mays | 4 | Zm00001eb054750_P001, Zm00001eb356040_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31254, nbis-gene-45313 |