Basic Information
Locus ID:
nbis-gene-31250
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00040.1 | 733703 | 744532 | - | nbis-gene-31250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.40 | 84,848.70 Da | 51.24 | 63.17 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 666 | 721 | 4.2274E-28 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 658 | 711 | 5.6E-6 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 517 | 563 | 1.4E-7 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 475 | 545 | 5.25E-8 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 666 | 768 | 2.55E-25 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 633 | 765 | 2.0E-33 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 473 | 561 | 7.9E-11 | IPR038718 |
| SMART | SM00490 | helicmild6 | 628 | 711 | 0.0011 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 594 | 764 | 9.562843 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 58 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11100.5 | - | 0 |
| RefSeq | XP_004970180.1 | helicase-like transcription factor CHR28 isoform X3 [Setaria italica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VFR8 | Helicase ATP-binding domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_16749 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology