Basic Information
Locus ID:
nbis-gene-31201
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00040.1 | 493713 | 510709 | - | nbis-gene-31201 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 81,167.45 Da | 42.90 | 85.86 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 111 | 169 | 2.2E-5 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 462 | 668 | 7.2E-49 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 230 | 452 | 1.3E-61 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 91 | 198 | 3.14E-16 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 260 | 377 | 1.2E-40 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 78 | 223 | 3.4E-14 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 378 | 475 | 1.2E-24 | - |
| Coils | Coil | Coil | 197 | 217 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_025815035.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X3 [Panicum hallii] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T8IJY3 | ubiquitinyl hydrolase 1 OS=Panicum hallii OX=206008 GN=PAHAL_5G142300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology