Basic Information
Locus ID:
nbis-gene-30939
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00039.1 | 1908833 | 1912270 | - | nbis-gene-30939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 31,155.15 Da | 57.77 | 51.20 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 82 | 216 | 4.59014E-56 | - |
| Pfam | PF00628 | PHD-finger | 200 | 248 | 8.3E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 83 | 195 | 1.9E-20 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 192 | 251 | 1.35E-19 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 50 | 192 | 4.2E-30 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 261 | 2.3E-21 | IPR013083 |
| SMART | SM00439 | BAH_4 | 81 | 196 | 2.6E-41 | IPR001025 |
| SMART | SM00249 | PHD_3 | 200 | 247 | 3.0E-9 | IPR001965 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 81 | 196 | 23.054808 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 198 | 249 | 9.2408 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 201 | 246 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 276 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_002460174.1 | chromatin remodeling protein EBS isoform X2 [Sorghum bicolor] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | C5XC21 | Chromatin remodeling protein EBS-like OS=Sorghum bicolor OX=4558 GN=SORBI_3002G192500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology