Basic Information
Locus ID:
nbis-gene-30880
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00039.1 | 1665886 | 1670663 | - | nbis-gene-30880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.31 | 37,732.73 Da | 52.99 | 83.90 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.97489E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 156 | 194 | 8.0E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 3.5E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 303 | 338 | 3.8E-9 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 242 | 273 | 1.4E-10 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 143 | 200 | 1.42E-10 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 242 | 280 | 7.98E-11 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 92 | 1.15E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 284 | 351 | 2.12E-12 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 7.4E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 294 | 342 | 5.4E-19 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 239 | 275 | 3.5E-11 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 149 | 199 | 2.7E-21 | - |
| SMART | SM00165 | uba_6 | 156 | 196 | 1.7E-6 | IPR015940 |
| SMART | SM00165 | uba_6 | 303 | 340 | 9.2E-7 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.3E-19 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 301 | 341 | 12.884254 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 154 | 197 | 12.233631 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.500748 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 329 | 344 | 5.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 244 | 266 | 5.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 314 | 328 | 5.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 297 | 313 | 5.8E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 109 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_025803519.1 | probable ubiquitin receptor RAD23 [Panicum hallii] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TDQ9 | Ubiquitin receptor RAD23 OS=Eragrostis curvula OX=38414 GN=EJB05_42971 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology