Basic Information
Locus ID:
nbis-gene-30820
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00039.1 | 1386155 | 1386994 | - | nbis-gene-30820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 30,739.64 Da | 30.10 | 89.57 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 17 | 138 | 2.7E-8 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 161 | 243 | 5.6E-6 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 14 | 268 | 5.11E-88 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 271 | 4.7E-97 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_004956826.1 | probable CCR4-associated factor 1 homolog 7 [Setaria italica] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A368Q0W9 | poly(A)-specific ribonuclease OS=Setaria italica OX=4555 GN=SETIT_2G205600v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology