Basic Information
Locus ID:
nbis-gene-30626
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
DNA-binding transcription factor activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00039.1 | 576742 | 581994 | + | nbis-gene-30626 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 91,456.45 Da | 67.33 | 58.07 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00447 | HSF-type DNA-binding | 507 | 597 | 1.4E-30 | IPR000232 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 504 | 597 | 1.36E-30 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 499 | 598 | 4.5E-35 | IPR036388 |
| SMART | SM00415 | hsfneu3 | 503 | 597 | 7.1E-58 | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 547 | 571 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 507 | 530 | 1.4E-18 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 546 | 558 | 1.4E-18 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 559 | 571 | 1.4E-18 | IPR000232 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 756 | 850 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 780 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 756 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 850 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 77 | - | - |
| Coils | Coil | Coil | 686 | 713 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G46264.1 | heat shock transcription factor B4. Encodes SCHIZORIZA, a member of Heat Shock Transcription Factor (Hsf) family. Functions as a nuclear factor regulating asymmetry of stem cell divisions. | 0 |
| RefSeq | XP_004957003.1 | heat stress transcription factor B-4c [Setaria italica] | 0 |
| Q67U94 | Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB4C PE=2 SV=1 | 0 | |
| TrEMBL | K3ZTX5 | HSF_DOMAIN domain-containing protein OS=Setaria italica OX=4555 GN=101756148 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology