Basic Information
Locus ID:
nbis-gene-30513
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00039.1 | 61668 | 63051 | + | nbis-gene-30513 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 43,962.14 Da | 38.22 | 98.29 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 304 | 0.079 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 197 | 217 | 0.029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 127 | 158 | 5.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 9 | 309 | 2.12E-32 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 167 | 383 | 1.2E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 166 | 3.2E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 177 | 218 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 162 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 304 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 221 | 259 | 20.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 288 | 313 | 9.171722 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 291 | 305 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034580917.1 | protein ROOT INITIATION DEFECTIVE 3-like [Setaria viridis] | 0 |
| TrEMBL | A0A1E5W7I3 | WD_REPEATS_REGION domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0005620 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag2G00042 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G013610 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103720694, gene-LOC103720696, gene-LOC120111278 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2221.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G13586 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0538730, gene-QOZ80_6BG0491960 |
| Poaceae | Oryza coarctata | 2 | Oco17G007400, Oco18G007630 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g30090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G215900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G007920 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10343, nbis-gene-30513 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.133 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11100, nbisL1-mrna-11103 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12411, nbisL1-mrna-12412, nbisL1-mrna-9616 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10654 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.34 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013812 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20369 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15323 |
| Salicaceae | Populus euphratica | 1 | populus_peu00751 |