Basic Information
Locus ID:
nbis-gene-30382
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00038.1 | 1921966 | 1928163 | - | nbis-gene-30382 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 71,535.96 Da | 49.77 | 92.75 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 240 | 283 | 3.89393E-26 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 446 | 483 | 3.9E-6 | IPR000225 |
| Pfam | PF04564 | U-box domain | 236 | 307 | 2.5E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 363 | 401 | 3.0E-10 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 225 | 312 | 6.56E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 332 | 616 | 3.13E-50 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 510 | 628 | 3.0E-12 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 325 | 509 | 1.1E-36 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 310 | 4.3E-29 | IPR013083 |
| SMART | SM00185 | arm_5 | 362 | 402 | 8.9E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 526 | 566 | 470.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 403 | 443 | 0.33 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 239 | 303 | 5.3E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 444 | 484 | 3.4 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 373 | 415 | 13.212399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 235 | 310 | 38.35672 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 635 | - | - |
| Coils | Coil | Coil | 54 | 74 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_039839867.1 | protein spotted leaf 11-like [Panicum virgatum] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9WP23 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_00955 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology