Basic Information
Locus ID:
nbis-gene-30258
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00038.1 | 1153061 | 1157775 | + | nbis-gene-30258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 19,646.80 Da | 46.84 | 58.64 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 34 | 95 | 1.8E-8 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 99 | 156 | 8.6E-26 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 31 | 86 | 2.62E-11 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 122 | 163 | 1.1E-18 | - |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 27 | 96 | 15.952883 | IPR008913 |
| ProSitePatterns | PS00198 | 4Fe-4S ferredoxin-type iron-sulfur binding region signature. | 81 | 92 | - | IPR017900 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_039802150.1 | E3 ubiquitin-protein ligase MIEL1-like [Panicum virgatum] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5USF8 | E3 ubiquitin-protein ligase MIEL1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0023138 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology