Basic Information
Locus ID:
nbis-gene-29965
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00037.1 | 2180641 | 2189406 | - | nbis-gene-29965 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 80,926.81 Da | 46.17 | 70.01 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 154 | 352 | 2.19224E-135 | - |
| CDD | cd18787 | SF2_C_DEAD | 363 | 493 | 6.1272E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 376 | 484 | 2.3E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 175 | 336 | 5.8E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 219 | 504 | 1.53E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 359 | 520 | 1.8E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 140 | 358 | 9.1E-67 | IPR027417 |
| SMART | SM00487 | ultradead3 | 169 | 366 | 4.8E-58 | IPR014001 |
| SMART | SM00490 | helicmild6 | 403 | 484 | 1.5E-31 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 150 | 178 | 10.433057 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 362 | 523 | 24.94421 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 181 | 351 | 29.471882 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 297 | 305 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 737 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 699 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_006646878.1 | eukaryotic initiation factor 4A-3 [Oryza brachyantha] | 0 |
| Q6Z2Z4 | Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1 | 0 | |
| TrEMBL | J3L9J6 | Eukaryotic initiation factor 4A-11 OS=Oryza brachyantha OX=4533 GN=102709429 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology