Basic Information
Locus ID:
nbis-gene-29793
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00037.1 | 1422246 | 1426484 | - | nbis-gene-29793 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 66,718.48 Da | 33.99 | 79.69 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 261 | 562 | 6.40483E-157 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 266 | 558 | 5.2E-43 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 20 | 244 | 1.57E-22 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 260 | 562 | 4.45E-48 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 259 | 563 | 6.4E-52 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 1 | 244 | 3.6E-17 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 1 | 245 | 18.251614 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 261 | 563 | 37.220165 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 585 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_025808695.1 | glycerophosphodiester phosphodiesterase GDPDL4-like [Panicum hallii] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5J9V0R4 | glycerophosphodiester phosphodiesterase OS=Eragrostis curvula OX=38414 GN=EJB05_21061 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology