Basic Information
Locus ID:
nbis-gene-29669
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00037.1 | 928969 | 936158 | + | nbis-gene-29669 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 72,768.30 Da | 50.66 | 59.72 | -1.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 414 | 454 | 0.00219686 | IPR002999 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 411 | 454 | 1.26E-6 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 404 | 458 | 8.5E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 652 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 652 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 637 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 405 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47690.1 | binding. | 0 |
| RefSeq | XP_025804884.1 | ABC transporter F family member 4-like isoform X2 [Panicum hallii] | 0 |
| B6EUB3 | Sister chromatid cohesion protein PDS5 homolog A OS=Arabidopsis thaliana OX=3702 GN=PDS5A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3GR96 | Tudor domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G304900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology