Basic Information
Locus ID:
nbis-gene-2941
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
ABCC5
Description:
ABC transporter that may affect phytic acid transport and compartmentalization. May function directly or indirectly in removing phytic acid from the cytosol or in vesicle trafficking. Required for phytic acid accumulation in developing seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00002.1 | 6844661 | 6850688 | + | nbis-gene-2941 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 94,189.45 Da | 43.10 | 108.44 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 308 | 566 | 3.70587E-92 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 737 | 822 | 3.9E-17 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 561 | 657 | 4.4E-11 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 308 | 515 | 6.4E-24 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 713 | 830 | 4.56E-29 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 295 | 564 | 1.83E-30 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 567 | 697 | 2.25E-30 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 273 | 565 | 9.5E-42 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 566 | 691 | 3.0E-19 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 703 | 844 | 1.9E-39 | IPR027417 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 490 | 742 | 13.425525 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 311 | 561 | 25.589043 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 630 | 644 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.2 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_039780041.1 | ABC transporter C family MRP4 [Panicum virgatum] | 0 |
| A7KVC2 | ABC transporter C family MRP4 OS=Zea mays OX=4577 GN=MRP4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WKF6 | ABC transmembrane type-1 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_08061 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology