Basic Information
Locus ID:
nbis-gene-29400
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00036.1 | 2107186 | 2118289 | + | nbis-gene-29400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 90,886.68 Da | 46.77 | 87.12 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00063 | Myosin head (motor domain) | 201 | 281 | 2.5E-28 | IPR001609 |
| Pfam | PF00063 | Myosin head (motor domain) | 125 | 159 | 3.0E-10 | IPR001609 |
| Pfam | PF00063 | Myosin head (motor domain) | 48 | 124 | 2.5E-25 | IPR001609 |
| Pfam | PF00612 | IQ calmodulin-binding motif | 372 | 392 | 0.0085 | IPR000048 |
| Pfam | PF00612 | IQ calmodulin-binding motif | 325 | 340 | 0.012 | IPR000048 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 29 | 423 | 8.35E-107 | IPR027417 |
| Gene3D | G3DSA:1.20.5.190 | - | 373 | 422 | 1.6E-9 | - |
| Gene3D | G3DSA:1.20.5.190 | - | 320 | 372 | 9.9E-11 | - |
| Gene3D | G3DSA:3.40.850.10 | Kinesin motor domain | 14 | 125 | 1.4E-34 | IPR036961 |
| Gene3D | G3DSA:1.10.10.820 | - | 149 | 198 | 1.8E-10 | - |
| Gene3D | G3DSA:1.20.58.530 | - | 199 | 303 | 3.4E-31 | - |
| SMART | SM00015 | iq_5 | 393 | 415 | 75.0 | IPR000048 |
| SMART | SM00015 | iq_5 | 322 | 344 | 0.081 | IPR000048 |
| SMART | SM00015 | iq_5 | 370 | 392 | 0.036 | IPR000048 |
| SMART | SM00015 | iq_5 | 345 | 367 | 5.9 | IPR000048 |
| SMART | SM00242 | MYSc_2a | 41 | 461 | 1.6E-28 | IPR001609 |
| ProSiteProfiles | PS51456 | Myosin motor domain profile. | 46 | 267 | 73.54818 | IPR001609 |
| ProSiteProfiles | PS51126 | Dilute domain profile. | 648 | 799 | 14.211752 | IPR002710 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 323 | 352 | 7.821401 | IPR000048 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 371 | 400 | 6.6502 | IPR000048 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 346 | 375 | 7.8763 | IPR000048 |
| ProSiteProfiles | PS50096 | IQ motif profile. | 394 | 423 | 7.5652 | IPR000048 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 656 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 635 | - | - |
| Coils | Coil | Coil | 508 | 591 | - | - |
| Coils | Coil | Coil | 456 | 497 | - | - |
| Coils | Coil | Coil | 417 | 444 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20490.1 | Myosin family protein with Dil domain. Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant. | 0 |
| RefSeq | XP_025816684.1 | myosin-17 [Panicum hallii] | 0 |
| F4K5J1 | Myosin-17 OS=Arabidopsis thaliana OX=3702 GN=XI-K PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9VE76 | Myosin motor domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_16086 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033730 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl21469, Sgl32083, Sgl32764, Sgl38048, Sgl47658, Sgl73332 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000046696 |
| Apiaceae | Apium graveolens | 1 | Ag10G00690 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G001510 |
| Brassicaceae | Brassica nigra | 2 | BniB05g004830.2N, BniB06g055190.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g23920 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013377 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18016 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.2141, BH01.50 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009586, gene-QYE76_028916 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr05G022250, Chr0G030460, Chr12G037710, Chr13G016450 |
| Poaceae | Zea mays | 1 | Zm00001eb343050_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-15709, nbis-gene-16142, nbis-gene-29400 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG15.968, evm.TU.LG16.1283, evm.TU.LG20.1277 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.974 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-21221, nbisL1-mrna-26239, nbisL1-mrna-27601 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7005 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10312, nbisL1-mrna-18336, nbisL1-mrna-7266 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.481 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009784 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5074, nbisL1-mrna-5075 |
| Salicaceae | Populus euphratica | 2 | populus_peu11888, populus_peu37973 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635994 |