Basic Information
Locus ID:
nbis-gene-29313
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00036.1 | 1627344 | 1628280 | + | nbis-gene-29313 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 22,240.12 Da | 42.76 | 87.05 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 133 | 195 | 2.20717E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 52 | 112 | 1.2E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 132 | 194 | 9.3E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 39 | 195 | 1.19E-37 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 127 | 201 | 1.1E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 8 | 120 | 2.5E-17 | - |
| SMART | SM00054 | efh_1 | 169 | 197 | 7.4E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 133 | 161 | 7.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 90 | 118 | 0.022 | IPR002048 |
| SMART | SM00054 | efh_1 | 53 | 81 | 0.029 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 129 | 164 | 15.182896 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 49 | 84 | 13.258112 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 165 | 200 | 12.78389 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 86 | 121 | 11.110167 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 142 | 154 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 62 | 74 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 99 | 111 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 178 | 190 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_025818898.1 | probable calcium-binding protein CML12 [Panicum hallii] | 0 |
| Q5ZD81 | Probable calcium-binding protein CML12 OS=Oryza sativa subsp. japonica OX=39947 GN=CML12 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835B2V4 | Calcium-binding protein CML15 OS=Digitaria exilis OX=1010633 GN=HU200_050118 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology