Basic Information
Locus ID:
nbis-gene-29277
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00036.1 | 1441175 | 1443901 | + | nbis-gene-29277 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 11,250.73 Da | 101.50 | 68.92 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 56 | 95 | 4.65974E-15 | - |
| Pfam | PF12906 | RING-variant domain | 56 | 93 | 2.6E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 51 | 98 | 7.59E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 41 | 101 | 3.0E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 55 | 100 | 5.3E-13 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 48 | 102 | 18.82605 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 37 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_039848205.1 | uncharacterized protein LOC120707378 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9VGQ4 | RING-CH-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_16410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology