Basic Information
Locus ID:
nbis-gene-29207
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00036.1 | 993359 | 993844 | + | nbis-gene-29207 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 17,203.48 Da | 32.26 | 88.45 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52058 | L domain-like | 3 | 75 | 1.19E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 85 | 7.8E-15 | IPR032675 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002458184.2 | protein TOO MANY MOUTHS [Sorghum bicolor] | 0 |
| TrEMBL | A0A0A9J6T0 | Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13498 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26211 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g219220 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg46524 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20840 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl56385, Sgl61916 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000017813, gene:ENSEOMG00000052864 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0009770, CQ.Regalona.r1.9AG0014860 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G003420 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716032 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1741.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G31753 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G80080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019584m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35720.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g051710.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0128, Ceq02G0326 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0339 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.492 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020229 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34096 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0025130, gene-QOZ80_1BG0075680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0179520.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053941 |
| Poaceae | Oryza coarctata | 2 | Oco01G014900, Oco02G015210 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g43440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G199700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G014970, Chr05G018780 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G624600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG051750, gene_TRIDC2BG055070 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G357100.1.cds1, TraesCS2B02G376300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb159500_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29205, nbis-gene-29207 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8250 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1783, evm.TU.LG15.1391 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.411 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28112 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18881 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7850 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000023l.87 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018826 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19652 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21187, nbisL1-mrna-24883 |
| Salicaceae | Populus euphratica | 1 | populus_peu02588 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603648 |
| Solanaceae | Solanum chilense | 1 | SOLCI005922500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005391 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15624 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2560 |