Basic Information
Locus ID:
nbis-gene-28852
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00035.1 | 1363700 | 1368849 | + | nbis-gene-28852 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 50,407.45 Da | 65.31 | 46.23 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 168 | 220 | 6.83E-10 | IPR012337 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 409 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039850311.1 | uncharacterized protein LOC120708932 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9VEY6 | BED-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_15822 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G006240, Chr04G025720, Chr07G004450 |
| Poaceae | Zea mays | 1 | Zm00001eb307380_P001 |
| Poaceae | Zoysia japonica | 21 | nbis-gene-1111, nbis-gene-13247, nbis-gene-14314 ... |