Basic Information
Locus ID:
nbis-gene-2884
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00002.1 | 6574731 | 6577947 | + | nbis-gene-2884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 60,920.96 Da | 75.42 | 79.11 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 275 | 318 | 5.47462E-17 | - |
| Pfam | PF13639 | Ring finger domain | 275 | 318 | 1.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 275 | 322 | 3.53E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 239 | 322 | 2.5E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 276 | 317 | 6.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 276 | 318 | 12.223724 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 391 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23980.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034572675.1 | RING-H2 finger protein ATL16-like [Setaria viridis] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9WJW0 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_07995 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.4956, BH01.4892, CH01.5494 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0233940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0408420.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_070735, gene-QYE76_070790 |
| Poaceae | Oryza coarctata | 2 | Oco05G003050, Oco06G003060 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g05570.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G479200, gene-BS78_03G205400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601966, Pt_Chr0604130 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G037150, Chr04G004380, Chr07G007150, Chr12G002270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G523300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG055150, gene_TRIDC4BG053460 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G415900.1.cds1, TraesCS4B02G316700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb004000_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2884, nbis-gene-4484 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2057, Zma_g4413 |