Basic Information
Locus ID:
nbis-gene-28808
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00035.1 | 998473 | 999400 | + | nbis-gene-28808 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 32,191.21 Da | 55.27 | 62.06 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05699 | hAT family C-terminal dimerisation region | 8 | 73 | 9.6E-8 | IPR008906 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 4 | 78 | 5.08E-16 | IPR012337 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 250 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039850311.1 | uncharacterized protein LOC120708932 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9VEY6 | BED-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_15822 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G006240, Chr04G025720, Chr07G004450 |
| Poaceae | Zea mays | 1 | Zm00001eb307380_P001 |
| Poaceae | Zoysia japonica | 21 | nbis-gene-1111, nbis-gene-13247, nbis-gene-14314 ... |