Basic Information
Locus ID:
nbis-gene-28682
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00034.1 | 2666919 | 2677669 | + | nbis-gene-28682 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 46,947.97 Da | 48.29 | 92.07 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 227 | 283 | 1.2E-4 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 320 | 361 | 8.6E-6 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 109 | 282 | 2.02E-14 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 107 | 307 | 1.2E-18 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 308 | 354 | 7.5E-5 | - |
| SMART | SM00577 | forpap2 | 115 | 333 | 0.0049 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 320 | 353 | 9.246434 | IPR014720 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_025878127.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X4 [Oryza sativa Japonica Group] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | Q5N889 | protein-serine/threonine phosphatase OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1402_H07.29-2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology