Basic Information
Locus ID:
nbis-gene-28644
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00034.1 | 2472110 | 2476587 | + | nbis-gene-28644 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.62 | 66,145.25 Da | 51.69 | 88.97 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 267 | 312 | 1.23532E-17 | - |
| Pfam | PF04564 | U-box domain | 263 | 337 | 6.8E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 370 | 538 | 2.64E-8 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 336 | 3.43E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 347 | 2.9E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 360 | 543 | 1.0E-6 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 266 | 334 | 3.0E-21 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 262 | 341 | 31.103247 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 188 | - | - |
| Coils | Coil | Coil | 375 | 395 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_025818643.1 | E3 ubiquitin-protein ligase PUB23-like [Panicum hallii] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6RLF9 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM13G14360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology