Basic Information
Locus ID:
nbis-gene-28641
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00034.1 | 2458746 | 2464603 | - | nbis-gene-28641 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.81 | 67,313.77 Da | 55.30 | 75.42 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 545 | 588 | 4.77976E-16 | - |
| Pfam | PF13639 | Ring finger domain | 545 | 588 | 2.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 541 | 593 | 2.78E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 542 | 590 | 6.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 546 | 587 | 1.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 546 | 588 | 12.371254 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 156 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004970694.1 | RING-H2 finger protein ATL75 [Setaria italica] | 0 |
| P0C034 | RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6SNU0 | RING-H2 finger protein ATL75-like OS=Panicum miliaceum OX=4540 GN=C2845_PM07G29700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.3986, BH02.4005, CH02.4034 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0041010, gene-QOZ80_1BG0091050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0299850.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco01G025750, Oco02G026680 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g64620.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G347700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G003800, Chr08G021400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G601700 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G377100.1.cds1, TraesCS3B02G409700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb146800_P001, Zm00001eb366740_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11275, nbis-gene-28641 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11613, Zma_g9073 |