Basic Information
Locus ID:
nbis-gene-28383
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Glycosyl transferase family 41
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00034.1 | 1374825 | 1384529 | + | nbis-gene-28383 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 26,363.61 Da | 30.40 | 88.60 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13414 | TPR repeat | 128 | 168 | 8.0E-10 | - |
| Pfam | PF13181 | Tetratricopeptide repeat | 188 | 215 | 1.3E-4 | IPR019734 |
| SUPERFAMILY | SSF48452 | TPR-like | 56 | 215 | 2.71E-33 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 163 | 231 | 4.1E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 32 | 121 | 2.6E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 122 | 162 | 3.0E-13 | IPR011990 |
| SMART | SM00028 | tpr_5 | 154 | 187 | 4.1E-6 | IPR019734 |
| SMART | SM00028 | tpr_5 | 188 | 221 | 0.064 | IPR019734 |
| SMART | SM00028 | tpr_5 | 86 | 119 | 64.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 120 | 153 | 1.5E-5 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 120 | 153 | 10.2959 | IPR019734 |
| ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 154 | 186 | 9.26057 | - |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 154 | 187 | 11.623401 | IPR019734 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04240.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. Has O-linked N-acetyl glucosamine transferase activity. Similar to Arabidopsis SPY gene. | 0 |
| RefSeq | XP_025817556.1 | probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X2 [Panicum hallii] | 0 |
| Q9M8Y0 | Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana OX=3702 GN=SEC PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VKT3 | TPR_REGION domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_17967 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044119 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28183 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2BG002960, gene_TRIDC3BG074590 |
| Poaceae | Triticum aestivum | 1 | TraesCS2B02G245700.1 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19012, nbis-gene-28383 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc02g22890, gene.Posoc02g28750, gene.Posoc05g03890 ... |