Basic Information
Locus ID:
nbis-gene-28359
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
XRI1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00034.1 | 1273444 | 1277109 | + | nbis-gene-28359 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 32,042.43 Da | 51.88 | 69.20 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48720.2 | x-ray induced transcript 1. Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation. | 0 |
| RefSeq | XP_025814147.1 | protein XRI1-like isoform X2 [Panicum hallii] | 0 |
| Q6NLW5 | Protein XRI1 OS=Arabidopsis thaliana OX=3702 GN=XRI1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9VKQ3 | Protein XRI1 OS=Eragrostis curvula OX=38414 GN=EJB05_17944 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg11154, jg12591, jg27870, jg5753 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5388 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah001419, Ah007708, Ah007713, Ah028289 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167750 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg26562, Sbi_jg30883, Sbi_jg34003, Sbi_jg58395 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15086, Seu_jg28272 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011906 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73846, Sgl77348 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000005682, gene:ENSEOMG00000007755 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010160, CQ.Regalona.r1.7BG0012290 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30021250, pistato.v30117930, pistato.v30119770 |
| Apiaceae | Apium graveolens | 2 | Ag6G02716, Ag7G00068 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G008490, COCNU_11G002690 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103697997, gene-LOC103699123, gene-LOC103709378 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.547.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G30934, Ftri9G17820 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G48720.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004684m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g19130.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g069780.2N, BniB04g005790.2N, BniB08g002240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1985 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2093 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g11880 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g21580 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6388, nbisL1-mrna-9758 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1395 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026019 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23981, Lb5G28659 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4315, BH02.4346, CH02.4391 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0044440, gene-QOZ80_1BG0094460 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0309790.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057384 |
| Poaceae | Oryza coarctata | 2 | Oco01G028410, Oco02G029490 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g68930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G381300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0600502 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G002600, Chr03G022720, Chr05G031830, Chr08G019300 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G672800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG060120, gene_TRIDC3BG067910 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G423900.1, TraesCS3B02G459800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb143390_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11004, nbis-gene-28359 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11806, Zma_g9261 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1041, evm.TU.LG12.690, evm.TU.LG19.1417 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g28910 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1215, evm.TU.Scaffold_9_RagTag.1119 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11687 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-8597, nbisL1-mrna-9083 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11235, nbisL1-mrna-18630 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.693, evm.TU.utg000006l.708 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009904, Maker00012952 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1367, nbisL1-mrna-9833 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19914 |
| Salicaceae | Populus euphratica | 2 | populus_peu30901, populus_peu37718 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607176, gene-LOC132610592 |
| Solanaceae | Solanum chilense | 2 | SOLCI000178700, SOLCI000393300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021388, gene-LOC107029463 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.340_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0651 |
| Zosteraceae | Zostera marina | 3 | Zosma01g39420.v3.1, Zosma03g30250.v3.1, Zosma04g01520.v3.1 |