Basic Information
Locus ID:
nbis-gene-28358
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00034.1 | 1268991 | 1270982 | + | nbis-gene-28358 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 11,003.24 Da | 45.30 | 67.07 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 17 | 89 | 6.6866E-49 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 18 | 88 | 2.8E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 3 | 93 | 4.34E-28 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 2 | 93 | 2.4E-39 | - |
| SMART | SM00213 | ubq_7 | 18 | 89 | 4.5E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 16 | 93 | 16.385197 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_025816958.1 | small ubiquitin-related modifier 1 [Panicum hallii] | 0 |
| P55857 | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0SAY6 | Small ubiquitin-related modifier OS=Panicum virgatum OX=38727 GN=PVAP13_5NG012658 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology