Basic Information
Locus ID:
nbis-gene-28234
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00034.1 | 792472 | 797755 | + | nbis-gene-28234 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 77,608.81 Da | 50.13 | 86.39 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03187 | GST_C_Phi | 584 | 698 | 2.04973E-54 | IPR034347 |
| CDD | cd03053 | GST_N_Phi | 494 | 569 | 1.72627E-39 | - |
| Pfam | PF02798 | Glutathione S-transferase, N-terminal domain | 494 | 567 | 5.1E-23 | IPR004045 |
| Pfam | PF00043 | Glutathione S-transferase, C-terminal domain | 597 | 692 | 1.8E-15 | IPR004046 |
| Pfam | PF00400 | WD domain, G-beta repeat | 229 | 260 | 0.048 | IPR001680 |
| SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 584 | 702 | 3.48E-30 | IPR036282 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 74 | 338 | 4.16E-28 | IPR036322 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 491 | 574 | 7.9E-28 | IPR036249 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 493 | 576 | 3.1E-32 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 56 | 338 | 1.0E-20 | IPR015943 |
| Gene3D | G3DSA:1.20.1050.10 | - | 581 | 698 | 3.5E-49 | - |
| SMART | SM00320 | WD40_4 | 301 | 340 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 94 | 129 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 260 | 0.0088 | IPR001680 |
| SMART | SM00320 | WD40_4 | 176 | 216 | 0.012 | IPR001680 |
| ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 579 | 707 | 20.609795 | IPR010987 |
| ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 493 | 574 | 26.891634 | IPR004045 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 83 | - | - |
| SFLD | SFLDG01150 | Main.1: Beta-like | 495 | 700 | 0.0 | - |
| SFLD | SFLDG01154 | Main.5: Phi-like | 492 | 700 | 0.0 | - |
| SFLD | SFLDG00358 | Main (cytGST) | 492 | 700 | 0.0 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_002459043.1 | autophagy-related protein 18a [Sorghum bicolor] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | C5XH35 | WD_REPEATS_REGION domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G416400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology