Basic Information
Locus ID:
nbis-gene-28182
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00034.1 | 571014 | 575299 | + | nbis-gene-28182 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 31,723.98 Da | 50.08 | 89.76 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 164 | 226 | 1.9E-10 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 99 | 152 | 3.4E-7 | IPR013765 |
| Gene3D | G3DSA:3.40.50.300 | - | 152 | 287 | 1.0E-22 | IPR027417 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 159 | 231 | 17.007721 | IPR020587 |
| PRINTS | PR00142 | RecA protein signature | 255 | 272 | 2.1E-8 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 202 | 231 | 2.1E-8 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 168 | 196 | 2.1E-8 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_012700109.1 | DNA repair protein recA homolog 2, mitochondrial isoform X3 [Setaria italica] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6USS7 | RECA_2 domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_5G455400v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology