Basic Information
Locus ID:
nbis-gene-28094
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00034.1 | 234255 | 237667 | - | nbis-gene-28094 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 15,676.78 Da | 31.10 | 83.05 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 72 | 113 | 9.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 65 | 118 | 9.96E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 121 | 3.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 72 | 112 | 3.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 72 | 113 | 12.017182 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021315493.1 | E3 ubiquitin-protein ligase At1g63170-like [Sorghum bicolor] | 0 |
| Q8LDB8 | E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2 | 0 | |
| TrEMBL | A0A194YSU0 | RING-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3004G323700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 1 | Oco17G002670 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28094 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7313 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21245 |