Basic Information
Locus ID:
nbis-gene-27996
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00033.1 | 2497322 | 2499544 | - | nbis-gene-27996 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.82 | 28,237.25 Da | 52.59 | 89.62 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 149 | 201 | 1.89502E-7 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 218 | 254 | 7.0E-8 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 205 | 257 | 1.49E-11 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 122 | 195 | 5.23E-12 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 127 | 211 | 1.5E-9 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 212 | 259 | 6.1E-12 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 226 | 253 | 11.047234 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03740.1 | BTB-POZ and MATH domain 4. | 0 |
| RefSeq | XP_039784289.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum virgatum] | 0 |
| Q9SRV1 | BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=BPM4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835C1U6 | Speckle-type POZ protein OS=Digitaria exilis OX=1010633 GN=HU200_021969 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Zoysia japonica | 5 | nbis-gene-27996, nbis-gene-31714, nbis-gene-48468 ... |