halophFGD

Basic Information

Locus ID: nbis-gene-27334

Species & Taxonomic ID: Zoysia japonica & 309978

Genome Assembly: GCA_040438285.1

Description: F-box domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zjn_sc00031.1	2126433	2133260	+	nbis-gene-27334

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.26	12,812.65 Da	31.80	74.32	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

Best hit

Source	Best Hit ID	Description
TAIR	AT1G55270.1	Galactose oxidase/kelch repeat superfamily protein.
RefSeq	NP_001309040.1	F-box/kelch-repeat protein At2g44130-like [Zea mays]
TrEMBL	B6TRE3	Protein kinase Kelch repeat:Kelch OS=Zea mays OX=4577 PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg18194, jg25375, jg4441
Aizoaceae	Mesembryanthemum crystallinum	3	gene_15719, gene_21357, gene_4480
Amaranthaceae	Atriplex hortensis	3	Ah010677, Ah019753, Ah019842
Amaranthaceae	Beta vulgaris	2	BVRB_3g059540, BVRB_9g220490
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg11478, Sbi_jg38374, Sbi_jg46407, Sbi_jg59151 ... Sbi_jg6475
Amaranthaceae	Salicornia europaea	3	Seu_jg15440, Seu_jg20728, Seu_jg23417
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003739, GOSA_00005260, GOSA_00012784
Amaranthaceae	Suaeda glauca	7	Sgl00536, Sgl00592, Sgl02542, Sgl05608, Sgl07697, Sgl55885 ... Sgl61075
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000015366, gene:ENSEOMG00000019718 ... gene:ENSEOMG00000032155, gene:ENSEOMG00000038826, gene:ENSEOMG00000045535, gene:ENSEOMG00000049505
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0011970, CQ.Regalona.r1.3BG0012020 ... CQ.Regalona.r1.7BG0010790, CQ.Regalona.r1.9AG0013830
Anacardiaceae	Pistacia vera	1	pistato.v30086130
Apiaceae	Apium graveolens	2	Ag2G01442, Ag5G00829
Arecaceae	Cocos nucifera	5	COCNU_03G016190, COCNU_03G016200, COCNU_08G001240 ... scaffold009298G000120, scaffold009732G000040
Arecaceae	Phoenix dactylifera	3	gene-LOC103715603, gene-LOC103720857, gene-LOC103720858
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2016.V1.1, AsparagusV1_09.428.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G10985, Ftri12G13218, Ftri18G13493
Brassicaceae	Arabidopsis thaliana	4	AT1G15670.1, AT1G80440.1, AT2G44130.1, AT3G59940.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10001782m.g.v1.0, Thhalv10006395m.g.v1.0 ... Thhalv10008027m.g.v1.0, Thhalv10018763m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g13980.v2.2, Sp4g26210.v2.2, Sp5g03240.v2.2 ... Sp5g35380.v2.2
Brassicaceae	Brassica nigra	8	BniB03g026380.2N, BniB03g033400.2N, BniB04g028150.2N ... BniB06g002630.2N, BniB06g041020.2N, BniB06g068520.2N, BniB08g028810.2N, BniB08g074300.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq05G0222, Ceq07G0237
Casuarinaceae	Casuarina glauca	3	Cgl04G1368, Cgl05G0231, Cgl07G0225
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno07g11660, gene.Cymno12g00390, gene.Cymno16g00490 ... gene.Cymno16g00500
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate03g19900, gene.Thate03g19930, gene.Thate03g19950 ... gene.Thate03g19960, gene.Thate04g20960
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4529
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.1834, evm.TU.LG01.382, evm.TU.LG11.434
Plantaginaceae	Plantago ovata	4	Pov_00006825, Pov_00015433, Pov_00020741, Pov_00039230
Plumbaginaceae	Limonium bicolor	1	Lb0G38321
Poaceae	Echinochloa crus-galli	11	AH01.2544, AH04.603, AH04.714, AH06.2178, AH07.2251 ... BH04.781, BH07.4018, CH04.773, CH06.2207, CH07.2131, CH07.684
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0105810, gene-QOZ80_2AG0134410 ... gene-QOZ80_2BG0159230, gene-QOZ80_2BG0189940, gene-QOZ80_6AG0544020, gene-QOZ80_6BG0497420, gene-QOZ80_9AG0679710, gene-QOZ80_9BG0703550
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0343990.1.CDS1 ... HORVU.MOREX.r3.4HG0344050.1.CDS1, HORVU.MOREX.r3.7HG0714750.1.CDS1
Poaceae	Lolium multiflorum	8	gene-QYE76_021526, gene-QYE76_034784, gene-QYE76_034852 ... gene-QYE76_064060, gene-QYE76_064078, gene-QYE76_064081, gene-QYE76_064082, gene-QYE76_064085
Poaceae	Oryza coarctata	7	Oco03G005530, Oco03G012900, Oco04G013480, Oco11G012050 ... Oco12G012220, Oco21G003820, Oco22G004630
Poaceae	Oryza sativa	5	LOC_Os02g11790.1, LOC_Os02g35530.1, LOC_Os06g39370.1 ... LOC_Os11g14140.1, LOC_Os12g31390.1
Poaceae	Paspalum vaginatum	6	gene-BS78_02G276500, gene-BS78_04G081900, gene-BS78_K290000 ... gene-BS78_04G166500, gene-BS78_05G117700, gene-BS78_10G180000
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0104133, Pt_Chr0104135, Pt_Chr0202042, Pt_Chr0404960 ... Pt_Chr0500882
Poaceae	Sporobolus alterniflorus	12	Chr02G029550, Chr06G009540, Chr07G019290, Chr10G017350 ... Chr11G005180, Chr15G011080, Chr16G011250, Chr17G010220, Chr17G010230, Chr17G010240, Chr26G001950, Chr31G002640
Poaceae	Thinopyrum elongatum	4	Tel4E01G138600, Tel4E01G138800, Tel6E01G350300 ... Tel7E01G606100
Poaceae	Triticum dicoccoides	8	gene_TRIDC4AG036200, gene_TRIDC4AG036220 ... gene_TRIDC4BG013580, gene_TRIDC4BG013590, gene_TRIDC6AG025500, gene_TRIDC6BG031780, gene_TRIDC7AG051730, gene_TRIDC7BG042110
Poaceae	Triticum aestivum	11	TraesCS4A02G228600.1.cds1, TraesCS4A02G228800.1.cds1 ... TraesCS4B02G087600.1.cds1, TraesCS4B02G087800.1.cds1, TraesCS4D02G084900.1.cds1, TraesCS4D02G085000.1.cds1, TraesCS6A02G178900.1.cds1, TraesCS6B02G206300.1.cds1, TraesCS6D02G165600.1, TraesCS7B02G257400.1.cds1, TraesCS7D02G352400.1.cds1
Poaceae	Zea mays	3	Zm00001eb168220_P001, Zm00001eb182480_P001 ... Zm00001eb277050_P001
Poaceae	Zoysia japonica	6	nbis-gene-20708, nbis-gene-27334, nbis-gene-33412 ... nbis-gene-41108, nbis-gene-48218, nbis-gene-57551
Poaceae	Zoysia macrostachya	5	Zma_g12428, Zma_g13718, Zma_g17728, Zma_g18587, Zma_g33005
Portulacaceae	Portulaca oleracea	10	evm.TU.LG06.1189, evm.TU.LG06.1564, evm.TU.LG07.1716 ... evm.TU.LG11.545, evm.TU.LG11.919, evm.TU.LG13.1046, evm.TU.LG15.1488, evm.TU.LG21.697, evm.TU.LG21.698, evm.TU.LG22.783
Posidoniaceae	Posidonia oceanica	6	gene.Posoc05g05060, gene.Posoc09g11520, gene.Posoc09g11540 ... gene.Posoc09g11570, gene.Posoc09g11590, gene.Posoc09g11600
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_18_RagTag.474, evm.TU.Scaffold_1_RagTag.1278 ... evm.TU.Scaffold_2_RagTag.1101, evm.TU.Scaffold_7_RagTag.1745
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-19784, nbisL1-mrna-27850, nbisL1-mrna-27851 ... nbisL1-mrna-28251, nbisL1-mrna-28262, nbisL1-mrna-28264, nbisL1-mrna-4087, nbisL1-mrna-6322, nbisL1-mrna-6969
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10710, nbisL1-mrna-14702, nbisL1-mrna-16229 ... nbisL1-mrna-17334
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-22196, nbisL1-mrna-4157, nbisL1-mrna-7897
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000002l.5, add.evm.TU.utg000009l.208 ... add.evm.TU.utg000016l.148, add.evm.TU.utg000023l.78
Rhizophoraceae	Kandelia obovata	4	Maker00006040, Maker00012063, Maker00016335, Maker00018714
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-19055, nbisL1-mrna-19663, nbisL1-mrna-19774 ... nbisL1-mrna-21789, nbisL1-mrna-23403
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-12427, nbisL1-mrna-13464, nbisL1-mrna-18024 ... nbisL1-mrna-21249, nbisL1-mrna-5652
Salicaceae	Populus euphratica	8	populus_peu02784, populus_peu02786, populus_peu04440 ... populus_peu12354, populus_peu22440, populus_peu23824, populus_peu35263, populus_peu37494
Solanaceae	Lycium barbarum	4	gene-LOC132598480, gene-LOC132607367, gene-LOC132633348 ... gene-LOC132634357
Solanaceae	Solanum chilense	4	SOLCI001215500, SOLCI001860100, SOLCI002138300 ... SOLCI006711400
Solanaceae	Solanum pennellii	4	gene-LOC107002641, gene-LOC107013780, gene-LOC107014907 ... gene-LOC107021474
Tamaricaceae	Reaumuria soongarica	2	STRG.14397_chr08_+, STRG.7087_chr04_-
Tamaricaceae	Tamarix chinensis	2	TC06G1293, TC12G1785
Zosteraceae	Zostera marina	3	Zosma04g25330.v3.1, Zosma05g01740.v3.1, Zosma05g07260.v3.1