Basic Information
Locus ID:
nbis-gene-26919
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00030.1 | 2706631 | 2718279 | + | nbis-gene-26919 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 99,795.65 Da | 40.59 | 82.79 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 130 | 224 | 1.1094E-24 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 581 | 684 | 1.0E-18 | IPR024729 |
| Pfam | PF00917 | MATH domain | 131 | 226 | 3.4E-12 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 701 | 758 | 5.9E-11 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 244 | 405 | 6.3E-23 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 239 | 522 | 1.77E-56 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 130 | 234 | 6.87E-27 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 241 | 344 | 1.7E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 616 | 707 | 1.2E-20 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 105 | 240 | 8.8E-37 | IPR008974 |
| Gene3D | G3DSA:2.20.210.10 | - | 345 | 389 | 2.0E-16 | - |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 83 | 224 | 21.873974 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 244 | 494 | 14.210494 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 245 | 260 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 857 | - | - |
| Coils | Coil | Coil | 507 | 534 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_025800316.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Panicum hallii] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0LHG4 | ubiquitinyl hydrolase 1 OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology