Basic Information
Locus ID:
nbis-gene-2640
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the plant LTP family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00002.1 | 5569132 | 5569940 | + | nbis-gene-2640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.53 | 21,834.90 Da | 63.18 | 68.79 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00010 | AAI_LTSS | 44 | 107 | 2.59943E-16 | - |
| Pfam | PF14368 | Probable lipid transfer | 19 | 115 | 1.7E-19 | IPR016140 |
| SUPERFAMILY | SSF47699 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 35 | 116 | 1.27E-18 | IPR036312 |
| Gene3D | G3DSA:1.10.110.10 | - | 34 | 113 | 8.9E-18 | IPR036312 |
| SMART | SM00499 | aai_6 | 37 | 115 | 3.8E-9 | IPR016140 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 36 | 52 | 4.9E-8 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 92 | 109 | 4.9E-8 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 59 | 73 | 4.9E-8 | IPR000528 |
| PRINTS | PR00382 | Plant phospholipid transfer protein signature | 111 | 122 | 4.9E-8 | IPR000528 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22600.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein. | 0 |
| RefSeq | XP_044979438.1 | non-specific lipid transfer protein GPI-anchored 31-like [Hordeum vulgare subsp. vulgare] | 0 |
| Q9LJ86 | Non-specific lipid transfer protein GPI-anchored 5 OS=Arabidopsis thaliana OX=3702 GN=LTPG5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WJG8 | AAI domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_07728 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg11424, jg26324, jg28463, jg30133, jg37857, jg6100 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10124, gene_9470 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah015859, Ah015862, Ah024591, Ah024642, Ah024848, Ah037102 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g190310 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25292, Sbi_jg9141 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19451 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011205 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl43003, Sgl47777, Sgl47824 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009683, gene:ENSEOMG00000013190 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0016250, CQ.Regalona.r1.1BG0009430 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30040670, pistato.v30102160 |
| Apiaceae | Apium graveolens | 2 | Ag4G02721, Ag9G00337 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G007320, COCNU_03G006580, COCNU_03G006590 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701737, gene-LOC103717216, gene-LOC103721068 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1777.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G04673 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G13820.1, AT4G08670.1, AT5G09370.1, AT5G64080.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10002896m.g.v1.0, Thhalv10003117m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g27150.v2.2, Sp6g33960.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g011490.2N, BniB04g001570.2N, BniB05g027440.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0653 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0704 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno03g11910, gene.Cymno03g12040, gene.Cymno05g13840 |
| Hydrocharitaceae | Thalassia testudinum | 7 | gene.Thate01g16220, gene.Thate01g21670, gene.Thate03g04210 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11035, nbisL1-mrna-2110 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1016, evm.TU.LG08.1181 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002086 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22619 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4682, CH01.5256, Contig181.102 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0236990, gene-QOZ80_3BG0291060 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0400520.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070191 |
| Poaceae | Oryza coarctata | 2 | Oco05G005160, Oco06G005330 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g09230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G450900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101495 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G026160, Chr12G013220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G451000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG005330, gene_TRIDC4BG046280 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G038400.1, TraesCS4B02G267300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb401230_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2640 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1889 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2629, evm.TU.LG08.1549, evm.TU.LG08.222 ... |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g23600, gene.Posoc02g28940, gene.Posoc02g28950 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1564 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-19116, nbisL1-mrna-2955, nbisL1-mrna-3644 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16472, nbisL1-mrna-2697 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18952 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000019l.305, evm.TU.utg000009l.374 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006017, Maker00012798 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2805 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21847 |
| Salicaceae | Populus euphratica | 5 | populus_peu02532, populus_peu14649, populus_peu32316 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598768, gene-LOC132622636 |
| Solanaceae | Solanum chilense | 1 | SOLCI005218300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008596 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9086 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0749 |
| Zosteraceae | Zostera marina | 2 | Zosma01g29820.v3.1, Zosma04g19850.v3.1 |