Basic Information
Locus ID:
nbis-gene-26161
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00029.1 | 1228723 | 1238429 | - | nbis-gene-26161 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 110,547.95 Da | 49.65 | 73.27 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 39 | 134 | 5.15432E-11 | - |
| CDD | cd12108 | Hr-like | 161 | 289 | 6.74144E-13 | - |
| CDD | cd12108 | Hr-like | 510 | 668 | 1.00885E-24 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 158 | 290 | 5.1E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 508 | 669 | 5.7E-7 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 860 | 904 | 1.0E-8 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 904 | 958 | 5.2E-22 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 852 | 904 | 1.29E-15 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 160 | 308 | 7.5E-16 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 925 | 966 | 9.1E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 505 | 727 | 3.1E-24 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 34 | 151 | 8.8E-14 | - |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 853 | 933 | 20.539383 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 762 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_025814043.1 | zinc finger protein BRUTUS-like [Panicum hallii] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SK57 | Zinc finger protein BRUTUS (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_55247 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology