Basic Information
Locus ID:
nbis-gene-25586
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00028.1 | 1419283 | 1420987 | - | nbis-gene-25586 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 33,132.65 Da | 48.53 | 100.71 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 14 | 54 | 3.90331E-22 | - |
| Pfam | PF04564 | U-box domain | 12 | 76 | 5.9E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 79 | 3.53E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 76 | 1.0E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 83 | 295 | 1.8E-5 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 11 | 74 | 1.9E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 7 | 81 | 33.367744 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 97 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_004977331.1 | E3 ubiquitin-protein ligase PUB23 [Setaria italica] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | K3YEX1 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101784926 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology