halophFGD

Basic Information

Locus ID: nbis-gene-24986

Species & Taxonomic ID: Zoysia japonica & 309978

Genome Assembly: GCA_040438285.1

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zjn_sc00027.1	1139447	1142343	-	nbis-gene-24986

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.57	13,295.00 Da	42.52	88.68	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	22	87	1.55E-10	IPR036322
Gene3D	G3DSA:2.130.10.10	-	9	120	2.8E-10	IPR015943
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	22	63	9.840087	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14962 (COMPASS component SWD2)

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G14530.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_040380084.1	protein ANTHESIS POMOTING FACTOR 1 [Oryza brachyantha]
Swiss-Prot	Q9LYK6	Protein ANTHESIS POMOTING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=APRF1 PE=2 SV=1
TrEMBL	A0A6A3BNJ3	WD_REPEATS_REGION domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110013pilonHSYRG00334 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Triticum dicoccoides	1	gene_TRIDC2AG040020
Poaceae	Zoysia japonica	1	nbis-gene-24986