Basic Information
Locus ID:
nbis-gene-24772
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00027.1 | 374655 | 375382 | + | nbis-gene-24772 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 23,385.15 Da | 44.70 | 83.97 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 147 | 209 | 1.27641E-22 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 70 | 132 | 1.8E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 146 | 208 | 1.6E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 58 | 209 | 5.99E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 143 | 215 | 6.3E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 31 | 142 | 3.4E-19 | - |
| SMART | SM00054 | efh_1 | 71 | 99 | 0.011 | IPR002048 |
| SMART | SM00054 | efh_1 | 183 | 211 | 2.5E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 107 | 135 | 0.028 | IPR002048 |
| SMART | SM00054 | efh_1 | 147 | 175 | 1.4E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 143 | 178 | 14.931837 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 67 | 102 | 13.871811 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 179 | 214 | 13.286007 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 103 | 138 | 10.133827 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 192 | 204 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 116 | 128 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 80 | 92 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 156 | 168 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 65 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_015639673.1 | probable calcium-binding protein CML14 [Oryza sativa Japonica Group] | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9IJR1 | Calcium-binding protein CML14 OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology